Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00555.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 770

Length: 1284
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:101 original size:2 final size:2

Alignment explanation


    Indices: 61--91  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

         51 TCTCTTTCAC

                                                *         
         61 AG AG AG AG AG AG AG AG AG AG AG AG TG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

         92 AAAAAGAGAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.48, T:0.03


Consensus pattern (2 bp):   
AG
Done.