Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00572.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1748
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:1428 original size:4 final size:4

Alignment explanation


    Indices: 1413--1446  Score: 50
    Period size: 4  Copynumber: 8.0  Consensus size: 4

       1403 TTTTAGTCCC

                                                     
       1413 TATT TCATT TATT TATT TATT TATT TAATT TATT
          1 TATT T-ATT TATT TATT TATT TATT T-ATT TATT

       1447 ATGAGTTATA


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   4   20  0.71
   5    8  0.29

ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71


Consensus pattern (4 bp):   
TATT

Found at i:1448 original size:12 final size:12

Alignment explanation


    Indices: 1413--1446  Score: 50
    Period size: 13  Copynumber: 2.7  Consensus size: 12

       1403 TTTTAGTCCC

                         
       1413 TATTTCATTTATT
          1 TATTT-ATTTATT

                        
       1426 TATTTATTTATT
          1 TATTTATTTATT

                     
       1438 TAATTTATT
          1 T-ATTTATT

       1447 ATGAGTTATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12    8  0.40
  13   12  0.60

ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71


Consensus pattern (12 bp):   
TATTTATTTATT
Done.