Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00580.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3015
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:2078 original size:13 final size:13

Alignment explanation


    Indices: 2060--2087  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2050 ATCCAACTCT

                         
       2060 TAATAAACTTTTA
          1 TAATAAACTTTTA

                         
       2073 TAATAAACTTTTA
          1 TAATAAACTTTTA

              
       2086 TA
          1 TA

       2088 TGAAATACCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46


Consensus pattern (13 bp):   
TAATAAACTTTTA
Done.