Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00591.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5879
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:3688 original size:146 final size:146

Alignment explanation


    Indices: 3317--3707  Score: 426
    Period size: 146  Copynumber: 2.6  Consensus size: 146

       3307 TTTTGGATAT

                *        *          *     * *                                
       3317 TAGGCTGCATGACGGGGGGAAGGATGTTCCTGGAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
          1 TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA

                  *            *      **** *                  *              
       3382 AATAAAATTACCACATT-AGAGGCTGTTTTCTAGGTCATTGTTAACTTAATGGGTGTAATGTTTT
         66 AATAAAGTTA-C-CATTCACA---TGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTTT

                       *   *     
       3446 GATATTTCAGGGTAGTTTTGG
        126 GATATTTCAGGATAGCTTTGG

                    *                                     **       *       * 
       3467 TAGGTTGCGTGACAGGGGGAAGGAAGTTCAGATTTCAGAAGGCTACTTAAATTTTTACTAAGCAT
          1 TAGGTTGCATGACAGGGGGAAGGAAGTTC------CAGAAGGCTACAAAAATTTTGACTAAGCTT

                                   *          *  *        *           *      
       3532 TTTCCAAATAAAGTTACCATTCATATGCCAACCATGTTATTGTTAATTTAAGGGGTGTGATGTTT
         60 TTTCCAAATAAAGTTACCATTCACATGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTT

              *                    
       3597 TGCTATTTTCAGGATAGCTTTGG
        125 TGATA-TTTCAGGATAGCTTTGG

                                                                             
       3620 TAGGTTGCATGACAGGGGGAAGGAAGTTCC-GAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
          1 TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA

                                    
       3684 AATAAAGTTACCATTCACATGCCA
         66 AATAAAGTTACCATTCACATGCCA

       3708 CAGGATGAAG


Statistics
Matches: 202,  Mismatches: 31, Indels: 20
        0.80            0.12        0.08

Matches are distributed among these distances:
 146   53  0.26
 147    1  0.00
 150   25  0.12
 152   34  0.17
 153   43  0.21
 154    4  0.02
 155    3  0.01
 156   39  0.19

ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34


Consensus pattern (146 bp):   
TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
AATAAAGTTACCATTCACATGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTTTGATAT
TTCAGGATAGCTTTGG
Done.