Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00602.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3692
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Found at i:3286 original size:151 final size:153
Alignment explanation
Indices: 2932--3354 Score: 480
Period size: 151 Copynumber: 2.7 Consensus size: 153
2922 TTTCTTTTTC
* *
2932 CTTTTCCTTTATTCC-TTTGTCCTCATGAATGGA-TCTTACAGCTTTAACCATCTTGAACTGCAT
1 CTTTTCCTTTA-TCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTG--T
* * * * * * * * *
2995 AAAATGGAACGATTATATAATGCAAGTGGAAGTGAGTGAATCGAACCAATTTGAACTCTGCAGAC
63 AAAAT-GAA--ATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGAC
* * *
3060 GGTTAAAGTGTATCATGTCTTACCTTGTT
125 GGATAAAGCGTATCATCTCTTACCTTGTT
*
3089 CTTTTCCTTTATCCTTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCATGAACTGTAA
1 CTTTTCCTTTATCC-TTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA
* * *
3154 AAGTGAAA-TATACGGTACAAGCGGATGTGATTGAACCAAACCAAGTTG-ACAT-TGAAGATGGA
65 AA-TGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAAC-TCTGAAGACGGA
*
3216 TAAAGCGTATCATCTCTTACTTTG-T
128 TAAAGCGTATCATCTCTTACCTTGTT
* * *
3241 CTTTTCATTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTTACAATCTTGAACTGTAAT
1 CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA-
*
3306 AATGAAACAATTGTATGATACAAGCGGATGTGATTGAACCAAACCAAGT
65 AATG--A-AATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGT
3355 CGACGCTGAA
Statistics
Matches: 230, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
151 49 0.21
152 16 0.07
153 31 0.13
154 33 0.14
155 36 0.16
156 3 0.01
157 19 0.08
158 17 0.07
159 26 0.11
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (153 bp):
CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAAA
ATGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGACGGATAA
AGCGTATCATCTCTTACCTTGTT
Done.