Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00602.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4004
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34


Found at i:3433 original size:151 final size:153

Alignment explanation


    Indices: 3079--3501  Score: 480
    Period size: 151  Copynumber: 2.7  Consensus size: 153

       3069 TTTCTTTTTC

                               *            *                                
       3079 CTTTTCCTTTATTCC-TTTGTCCTCATGAATGGA-TCTTACAGCTTTAACCATCTTGAACTGCAT
          1 CTTTTCCTTTA-TCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTG--T

                              *  *    *   *    *    * *      *          *    
       3142 AAAATGGAACGATTATATAATGCAAGTGGAAGTGAGTGAATCGAACCAATTTGAACTCTGCAGAC
         63 AAAAT-GAA--ATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGAC

              *     *       *            
       3207 GGTTAAAGTGTATCATGTCTTACCTTGTT
        125 GGATAAAGCGTATCATCTCTTACCTTGTT

                                                                  *          
       3236 CTTTTCCTTTATCCTTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCATGAACTGTAA
          1 CTTTTCCTTTATCC-TTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA

                         * *                                             *   
       3301 AAGTGAAA-TATACGGTACAAGCGGATGTGATTGAACCAAACCAAGTTG-ACAT-TGAAGATGGA
         65 AA-TGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAAC-TCTGAAGACGGA

                                *     
       3363 TAAAGCGTATCATCTCTTACTTTG-T
        128 TAAAGCGTATCATCTCTTACCTTGTT

                  *                                       *  *               
       3388 CTTTTCATTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTTACAATCTTGAACTGTAAT
          1 CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA-

                        *                                    
       3453 AATGAAACAATTGTATGATACAAGCGGATGTGATTGAACCAAACCAAGT
         65 AATG--A-AATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGT

       3502 CGACGCTGAA


Statistics
Matches: 230,  Mismatches: 26, Indels: 22
        0.83            0.09        0.08

Matches are distributed among these distances:
 151   49  0.21
 152   16  0.07
 153   31  0.13
 154   33  0.14
 155   36  0.16
 156    3  0.01
 157   19  0.08
 158   17  0.07
 159   26  0.11

ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35


Consensus pattern (153 bp):   
CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAAA
ATGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGACGGATAA
AGCGTATCATCTCTTACCTTGTT
Done.