Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00602.F8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3418
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Found at i:3012 original size:151 final size:153
Alignment explanation
Indices: 2658--3080 Score: 480
Period size: 151 Copynumber: 2.7 Consensus size: 153
2648 TTTCTTTTTC
* *
2658 CTTTTCCTTTATTCC-TTTGTCCTCATGAATGGA-TCTTACAGCTTTAACCATCTTGAACTGCAT
1 CTTTTCCTTTA-TCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTG--T
* * * * * * * * *
2721 AAAATGGAACGATTATATAATGCAAGTGGAAGTGAGTGAATCGAACCAATTTGAACTCTGCAGAC
63 AAAAT-GAA--ATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGAC
* * *
2786 GGTTAAAGTGTATCATGTCTTACCTTGTT
125 GGATAAAGCGTATCATCTCTTACCTTGTT
*
2815 CTTTTCCTTTATCCTTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCATGAACTGTAA
1 CTTTTCCTTTATCC-TTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA
* * *
2880 AAGTGAAA-TATACGGTACAAGCGGATGTGATTGAACCAAACCAAGTTG-ACAT-TGAAGATGGA
65 AA-TGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAAC-TCTGAAGACGGA
*
2942 TAAAGCGTATCATCTCTTACTTTG-T
128 TAAAGCGTATCATCTCTTACCTTGTT
* * *
2967 CTTTTCATTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTTACAATCTTGAACTGTAAT
1 CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA-
*
3032 AATGAAACAATTGTATGATACAAGCGGATGTGATTGAACCAAACCAAGT
65 AATG--A-AATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGT
3081 CGACGCTGAA
Statistics
Matches: 230, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
151 49 0.21
152 16 0.07
153 31 0.13
154 33 0.14
155 36 0.16
156 3 0.01
157 19 0.08
158 17 0.07
159 26 0.11
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (153 bp):
CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAAA
ATGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGACGGATAA
AGCGTATCATCTCTTACCTTGTT
Done.