Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00602.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3772
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34


Found at i:3366 original size:151 final size:153

Alignment explanation


    Indices: 3012--3434  Score: 480
    Period size: 151  Copynumber: 2.7  Consensus size: 153

       3002 TTTCTTTTTC

                               *            *                                
       3012 CTTTTCCTTTATTCC-TTTGTCCTCATGAATGGA-TCTTACAGCTTTAACCATCTTGAACTGCAT
          1 CTTTTCCTTTA-TCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTG--T

                              *  *    *   *    *    * *      *          *    
       3075 AAAATGGAACGATTATATAATGCAAGTGGAAGTGAGTGAATCGAACCAATTTGAACTCTGCAGAC
         63 AAAAT-GAA--ATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGAC

              *     *       *            
       3140 GGTTAAAGTGTATCATGTCTTACCTTGTT
        125 GGATAAAGCGTATCATCTCTTACCTTGTT

                                                                  *          
       3169 CTTTTCCTTTATCCTTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCATGAACTGTAA
          1 CTTTTCCTTTATCC-TTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA

                         * *                                             *   
       3234 AAGTGAAA-TATACGGTACAAGCGGATGTGATTGAACCAAACCAAGTTG-ACAT-TGAAGATGGA
         65 AA-TGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAAC-TCTGAAGACGGA

                                *     
       3296 TAAAGCGTATCATCTCTTACTTTG-T
        128 TAAAGCGTATCATCTCTTACCTTGTT

                  *                                       *  *               
       3321 CTTTTCATTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTTACAATCTTGAACTGTAAT
          1 CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAA-

                        *                                    
       3386 AATGAAACAATTGTATGATACAAGCGGATGTGATTGAACCAAACCAAGT
         65 AATG--A-AATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGT

       3435 CGACGCTGAA


Statistics
Matches: 230,  Mismatches: 26, Indels: 22
        0.83            0.09        0.08

Matches are distributed among these distances:
 151   49  0.21
 152   16  0.07
 153   31  0.13
 154   33  0.14
 155   36  0.16
 156    3  0.01
 157   19  0.08
 158   17  0.07
 159   26  0.11

ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35


Consensus pattern (153 bp):   
CTTTTCCTTTATCCTTTTCTCCTCATGAATGAATTCTTACAGCTTTAACCATCTTGAACTGTAAA
ATGAAATTATATGATACAAGCGGATGTGATTGAACCAAACCAAGTTGAACTCTGAAGACGGATAA
AGCGTATCATCTCTTACCTTGTT
Done.