Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00604.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27


Found at i:228 original size:27 final size:27

Alignment explanation


    Indices: 190--249  Score: 111
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        180 AATCACCGTC

                 *                     
        190 ATCATTGCGATTAGGTTTGGGTGAGTT
          1 ATCATCGCGATTAGGTTTGGGTGAGTT

                                       
        217 ATCATCGCGATTAGGTTTGGGTGAGTT
          1 ATCATCGCGATTAGGTTTGGGTGAGTT

                  
        244 ATCATC
          1 ATCATC

        250 ACGCCTTTGA


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.20, C:0.12, G:0.30, T:0.38


Consensus pattern (27 bp):   
ATCATCGCGATTAGGTTTGGGTGAGTT
Done.