Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00609.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2406
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28


Found at i:1981 original size:12 final size:12

Alignment explanation


    Indices: 1964--1998  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1954 ATCAAGTAAG

                        
       1964 TGATTCTGATTA
          1 TGATTCTGATTA

                      * 
       1976 TGATTCTGATGA
          1 TGATTCTGATTA

                 *     
       1988 TGATTTTGATT
          1 TGATTCTGATT

       1999 TCAGCATTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.23, C:0.06, G:0.20, T:0.51


Consensus pattern (12 bp):   
TGATTCTGATTA
Done.