Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00612.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6120
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:186 original size:3 final size:3

Alignment explanation


    Indices: 178--202  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        168 TGGAGATGGA

                                             
        178 GGC GGC GGC GGC GGC GGC GGC GGC G
          1 GGC GGC GGC GGC GGC GGC GGC GGC G

        203 AAAAGGAAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.32, G:0.68, T:0.00


Consensus pattern (3 bp):   
GGC

Found at i:3965 original size:19 final size:20

Alignment explanation


    Indices: 3941--3983  Score: 63
    Period size: 19  Copynumber: 2.2  Consensus size: 20

       3931 ACAAATTTTA

                                 
       3941 AAAACA-TATAAAAAATTAC-
          1 AAAACATTAT-AAAAATTACG

                                
       3960 AAAACATTATAAAAATTACG
          1 AAAACATTATAAAAATTACG

                
       3980 AAAA
          1 AAAA

       3984 TAAATGAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  19   15  0.68
  20    7  0.32

ACGTcount: A:0.67, C:0.09, G:0.02, T:0.21


Consensus pattern (20 bp):   
AAAACATTATAAAAATTACG
Done.