Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00617.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27


Found at i:597 original size:23 final size:21

Alignment explanation


    Indices: 553--617  Score: 58
    Period size: 22  Copynumber: 3.0  Consensus size: 21

        543 GAAAAATATA

                     *           
        553 CATTTTGTTCTTTTTTGCTGT
          1 CATTTTGTTATTTTTTGCTGT

                             *     
        574 CATTTCTGTTATTTTTTTCTTGT
          1 CATTT-TGTTATTTTTTGC-TGT

              *       *  *       
        597 CCTTTTTGTTGTTGTTTGCTG
          1 -CATTTTGTTATTTTTTGCTG

        618 CTGTCTTTTT


Statistics
Matches: 35,  Mismatches: 6, Indels: 5
        0.76            0.13        0.11

Matches are distributed among these distances:
  21    5  0.14
  22   13  0.37
  23   13  0.37
  24    4  0.11

ACGTcount: A:0.05, C:0.14, G:0.15, T:0.66


Consensus pattern (21 bp):   
CATTTTGTTATTTTTTGCTGT
Done.