Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00620.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3030
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39


Found at i:1883 original size:21 final size:21

Alignment explanation


    Indices: 1838--1883  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1828 CATTTCATTG

                                *
       1838 TGTTTGGAAGAAACAAAGAAG
          1 TGTTTGGAAGAAACAAAGAAA

                     *   *   *   
       1859 TGTTTGGAATAAATAAATAAA
          1 TGTTTGGAAGAAACAAAGAAA

                
       1880 TGTT
          1 TGTT

       1884 GTCAGCATGT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30


Consensus pattern (21 bp):   
TGTTTGGAAGAAACAAAGAAA
Done.