Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00624.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:2134 original size:22 final size:22

Alignment explanation


    Indices: 2108--2152  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2098 AAAAAAGTGG

                             *    
       2108 GGTTTCAAGTTATAAGTGTTAA
          1 GGTTTCAAGTTATAAGTATTAA

                                  
       2130 GGTTTCAAGTTATAAGTATTAA
          1 GGTTTCAAGTTATAAGTATTAA

             
       2152 G
          1 G

       2153 TTAGAAGAGG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.33, C:0.04, G:0.22, T:0.40


Consensus pattern (22 bp):   
GGTTTCAAGTTATAAGTATTAA
Done.