Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00625.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3171
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:2317 original size:14 final size:15

Alignment explanation


    Indices: 2290--2318  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       2280 CCAACATTAT

                           
       2290 CATCCATGGATTGCA
          1 CATCCATGGATTGCA

                           
       2305 CATCCAT-GATTGCA
          1 CATCCATGGATTGCA

       2319 AACAAGGAGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    7  0.50
  15    7  0.50

ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28


Consensus pattern (15 bp):   
CATCCATGGATTGCA
Done.