Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00627.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1675
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:1110 original size:30 final size:30

Alignment explanation


    Indices: 1070--1157  Score: 124
    Period size: 30  Copynumber: 2.9  Consensus size: 30

       1060 TATGGATCAA

                 *       *          *      
       1070 AGGGACAAACC-ACGAAGAAGCACCGATACC
          1 AGGGAGAAACCAAGGAA-AAGCACTGATACC

                                          
       1100 AGGGAGAAACCAAGGAAAAGCACTGATACC
          1 AGGGAGAAACCAAGGAAAAGCACTGATACC

                       *                
       1130 AGGGAGAAACCGAGGAAAAGCACTGATA
          1 AGGGAGAAACCAAGGAAAAGCACTGATA

       1158 GACCCCCAAG


Statistics
Matches: 53,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  30   49  0.92
  31    4  0.08

ACGTcount: A:0.45, C:0.22, G:0.27, T:0.06


Consensus pattern (30 bp):   
AGGGAGAAACCAAGGAAAAGCACTGATACC
Done.