Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00657.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3957
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:3307 original size:65 final size:65

Alignment explanation


    Indices: 3203--3332  Score: 251
    Period size: 65  Copynumber: 2.0  Consensus size: 65

       3193 AAATATGTTA

                                                                             
       3203 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
          1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG

                                       *                                     
       3268 GTTTTCAAGTATGAATTTAGCCAAAAGTATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
          1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG

       3333 AACTTGTTCC


Statistics
Matches: 64,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  65   64  1.00

ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38


Consensus pattern (65 bp):   
GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
Done.