Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00658.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3140
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30


Found at i:2632 original size:153 final size:153

Alignment explanation


    Indices: 2351--2648  Score: 488
    Period size: 153  Copynumber: 1.9  Consensus size: 153

       2341 GATCTATGGA

                                            *          *                *    
       2351 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAACTAAGTTAGATTTACCGGAGGGGAGAACGAGGT
          1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT

                                                         * *          *     *
       2416 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATATCGAAAGTGAGATTCAGGCG
         66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC

                                   
       2481 CTTGCTAAACTCAATTCAGGGCG
        131 CTTGCTAAACTCAATTCAGGGCG

                  *                                              *           
       2504 TTCTTTGGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGTGAGAACAAGGT
          1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT

                                  *                     *                    
       2569 TGGAGAAGAGTTGTTCCAAAAGTAAGGATAGAAAAGATGATAATGCCAAAAGTGAGATCCAGGCC
         66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC

                *          
       2634 CTTGTTAAACTCAAT
        131 CTTGCTAAACTCAAT

       2649 CTAAAGCTCC


Statistics
Matches: 133,  Mismatches: 12, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 153  133  1.00

ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24


Consensus pattern (153 bp):   
TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
CTTGCTAAACTCAATTCAGGGCG
Done.