Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00658.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2439
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Found at i:1931 original size:153 final size:153
Alignment explanation
Indices: 1650--1947 Score: 488
Period size: 153 Copynumber: 1.9 Consensus size: 153
1640 GATCTATGGA
* * *
1650 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAACTAAGTTAGATTTACCGGAGGGGAGAACGAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* * * *
1715 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATATCGAAAGTGAGATTCAGGCG
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
1780 CTTGCTAAACTCAATTCAGGGCG
131 CTTGCTAAACTCAATTCAGGGCG
* *
1803 TTCTTTGGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGTGAGAACAAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* *
1868 TGGAGAAGAGTTGTTCCAAAAGTAAGGATAGAAAAGATGATAATGCCAAAAGTGAGATCCAGGCC
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
*
1933 CTTGTTAAACTCAAT
131 CTTGCTAAACTCAAT
1948 CTAAAGCTCC
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
153 133 1.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (153 bp):
TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
CTTGCTAAACTCAATTCAGGGCG
Done.