Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00665.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:1290 original size:15 final size:16

Alignment explanation


    Indices: 1260--1292  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1250 AAGCTGTGTA

                     *      
       1260 AACACAAACGCAACAC
          1 AACACAAACACAACAC

                            
       1276 AACAC-AACACAACAC
          1 AACACAAACACAACAC

              
       1291 AA
          1 AA

       1293 ATGTGTATTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00


Consensus pattern (16 bp):   
AACACAAACACAACAC
Done.