Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00670.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 400

Length: 668
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:628 original size:40 final size:40

Alignment explanation


    Indices: 583--662  Score: 115
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        573 AATTTAATTG

                             *                      
        583 ATTCAATTGATTAATTTTATTAATAGTGCATTGAAGATGT
          1 ATTCAATTGATTAATTTGATTAATAGTGCATTGAAGATGT

                        **          *   *           
        623 ATTCAATTGATTGGTTTGATTAATGGTGTATTGAAGATGT
          1 ATTCAATTGATTAATTTGATTAATAGTGCATTGAAGATGT

        663 TCAGTG


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  40   35  1.00

ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45


Consensus pattern (40 bp):   
ATTCAATTGATTAATTTGATTAATAGTGCATTGAAGATGT
Done.