Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00671.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29


Found at i:555 original size:3 final size:3

Alignment explanation


    Indices: 549--580  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        539 AAAGAAAACA

                                                *     
        549 CAG CAG CAG CAG CAG CAG CAG CAG CAG GAG CA
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA

        581 AGAAAAGAAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00


Consensus pattern (3 bp):   
CAG

Found at i:597 original size:9 final size:8

Alignment explanation


    Indices: 580--613  Score: 50
    Period size: 9  Copynumber: 4.0  Consensus size: 8

        570 CAGCAGGAGC

                    
        580 AAGAAAAG
          1 AAGAAAAG

                     
        588 AAGAAGAAG
          1 AAGAA-AAG

                     
        597 AAGAAAAAG
          1 AAG-AAAAG

                    
        606 AAGAAAAG
          1 AAGAAAAG

        614 TAGTAAACTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
   8   10  0.42
   9   12  0.50
  10    2  0.08

ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00


Consensus pattern (8 bp):   
AAGAAAAG
Done.