Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00673.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28


Found at i:1321 original size:3 final size:3

Alignment explanation


    Indices: 1294--1337  Score: 52
    Period size: 3  Copynumber: 14.7  Consensus size: 3

       1284 ACAATTGGAT

                      *       *   *   *                               
       1294 CAA CAA CAG CAA CAG CAG CAG CAA CAA CAA CAA CAA CAA CAA CA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CA

       1338 GTTCGTGCAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.57, C:0.34, G:0.09, T:0.00


Consensus pattern (3 bp):   
CAA
Done.