Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00682.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35


Found at i:1071 original size:40 final size:40

Alignment explanation


    Indices: 1021--1102  Score: 164
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1011 TCTTTTGCAT

                                                    
       1021 ATGAAATGGTTCCTCTCACAGCATACGTGTGTTGTATTGC
          1 ATGAAATGGTTCCTCTCACAGCATACGTGTGTTGTATTGC

                                                    
       1061 ATGAAATGGTTCCTCTCACAGCATACGTGTGTTGTATTGC
          1 ATGAAATGGTTCCTCTCACAGCATACGTGTGTTGTATTGC

              
       1101 AT
          1 AT

       1103 TCATTTGTCA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   42  1.00

ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35


Consensus pattern (40 bp):   
ATGAAATGGTTCCTCTCACAGCATACGTGTGTTGTATTGC
Done.