Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00689.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:400 original size:102 final size:102

Alignment explanation


    Indices: 219--420  Score: 377
    Period size: 102  Copynumber: 2.0  Consensus size: 102

        209 CAGGTGAAGA

                                                                             
        219 TGATAAGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTG
          1 TGATAAGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTG

                                                 
        284 CTGGACCTCCGAAAGTTGAATCTGATATGGAAATTGT
         66 CTGGACCTCCGAAAGTTGAATCTGATATGGAAATTGT

                *            *                            *                  
        321 TGATGAGAATGAAATAGTTACTGAAAATACTGCATTTGTGCATGGGGAACCACCTCAAGATGCTG
          1 TGATAAGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTG

                                               
        386 CTGGACCTCCGAAAGTTGAATCTGATATGGAAATT
         66 CTGGACCTCCGAAAGTTGAATCTGATATGGAAATT

        421 CTTCATGAAA


Statistics
Matches: 97,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 102   97  1.00

ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27


Consensus pattern (102 bp):   
TGATAAGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTG
CTGGACCTCCGAAAGTTGAATCTGATATGGAAATTGT
Done.