Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00693.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2518
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:23 original size:3 final size:3

Alignment explanation


    Indices: 15--46  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

          5 AGAAGAGAAG

                                    *                 
         15 TTC TTC TTC TTC TTC TTC CTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

         47 TTTTGTAAAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTC

Done.