Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00715.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29


Found at i:842 original size:12 final size:12

Alignment explanation


    Indices: 825--872  Score: 60
    Period size: 12  Copynumber: 4.0  Consensus size: 12

        815 AGAGGGAAAA

                       *
        825 GATGATGACGAG
          1 GATGATGACGAT

                    *   
        837 GATGATGATGAT
          1 GATGATGACGAT

                 *      
        849 GATGAAGACGAT
          1 GATGATGACGAT

              *         
        861 GACGATGACGAT
          1 GATGATGACGAT

        873 AACTAAATTC


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   30  1.00

ACGTcount: A:0.35, C:0.08, G:0.35, T:0.21


Consensus pattern (12 bp):   
GATGATGACGAT
Done.