Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00722.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 506

Length: 844
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34


Found at i:430 original size:13 final size:14

Alignment explanation


    Indices: 412--442  Score: 55
    Period size: 14  Copynumber: 2.3  Consensus size: 14

        402 TTTATAGCCA

                          
        412 AAATAAAT-AAAAG
          1 AAATAAATAAAAAG

                          
        425 AAATAAATAAAAAG
          1 AAATAAATAAAAAG

                
        439 AAAT
          1 AAAT

        443 CCAAATTTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    8  0.47
  14    9  0.53

ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16


Consensus pattern (14 bp):   
AAATAAATAAAAAG

Done.