Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00734.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 327

Length: 545
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Found at i:348 original size:18 final size:18

Alignment explanation


    Indices: 315--351  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        305 TTAGCTAGGG

                              
        315 TTTTTTTTATTATTTTTC
          1 TTTTTTTTATTATTTTTC

                               
        333 TTTTGTTTTATT-TTTTTC
          1 TTTT-TTTTATTATTTTTC

             
        351 T
          1 T

        352 GAAAATGTTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  18   11  0.61
  19    7  0.39

ACGTcount: A:0.08, C:0.05, G:0.03, T:0.84


Consensus pattern (18 bp):   
TTTTTTTTATTATTTTTC
Done.