Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00737.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1352
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Found at i:1243 original size:87 final size:87

Alignment explanation


    Indices: 1091--1267  Score: 255
    Period size: 87  Copynumber: 2.0  Consensus size: 87

       1081 GTGCTGTTCT

                                      *    *            *            *       
       1091 GTATTCAATACCATATTTTAGGTGATTTTGAGGAACTGCACGTAGCTTCGAATCTAGTGCAAAAA
          1 GTATTCAATACCATATTTTAGGTGATCTTGAAGAACTGCACGTAACTTCGAATCTAGGGCAAAAA

                                  
       1156 AGGATGGTGCTTAACATGGATA
         66 AGGATGGTGCTTAACATGGATA

                          *    *                    *       *           *    
       1178 GTATTCAATACCATCTTTTGGGTGATCTTGAAGAACTGCATGTAACTTGGAATCTAGGGCTAAAA
          1 GTATTCAATACCATATTTTAGGTGATCTTGAAGAACTGCACGTAACTTCGAATCTAGGGCAAAAA

               *          *       
       1243 AGGGTGGTGCTTAATATGGATA
         66 AGGATGGTGCTTAACATGGATA

               
       1265 GTA
          1 GTA

       1268 CTATAATTAT


Statistics
Matches: 79,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  87   79  1.00

ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32


Consensus pattern (87 bp):   
GTATTCAATACCATATTTTAGGTGATCTTGAAGAACTGCACGTAACTTCGAATCTAGGGCAAAAA
AGGATGGTGCTTAACATGGATA
Done.