Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00741.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2453
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1373 original size:164 final size:164

Alignment explanation


    Indices: 1097--1425  Score: 534
    Period size: 164  Copynumber: 2.0  Consensus size: 164

       1087 ACACGGATAC

                *                               *                            
       1097 TTCACGAAAAGTAGAGTCAGAGCAACATAGGTAGCAGCTGATTGAACTGTTCAATCATGTCAAAG
          1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG

                            *                                    *    *      
       1162 TTTTAGATGATGAATAGCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATTTTTTGTTGGCT
         66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT

                                     **        
       1227 TTA-CTTCGTATGGTAAAAGATTTTTTCTCGATTG
        131 TTACCTT-GTATGGTAAAAGATTTTGGCTCGATTG

                              *         *                        *           
       1261 TTCAAGAAAAGTAGAGTCGGAGCAACATTGGTAGCACCTGATTGAACTGTTCAGTCATGTCAAAG
          1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG

                               *   *                                         
       1326 TTTTAGATGATGAATACCCTTTGGAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
         66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT

                                              
       1391 TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG
        131 TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG

             
       1425 T
          1 T

       1426 AATCTTCATA


Statistics
Matches: 152,  Mismatches: 12, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
 164  149  0.98
 165    3  0.02

ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Consensus pattern (164 bp):   
TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG
Done.