Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00746.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2691
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36


Found at i:370 original size:24 final size:24

Alignment explanation


    Indices: 312--370  Score: 57
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        302 TTATGATGGC

                    *             * 
        312 GACCGTAACCGTAACCGTGGACGT
          1 GACCGTAATCGTAACCGTGGACAT

              *   *     *            
        336 GATCGTGATCGTGACCGT-GACCAT
          1 GACCGTAATCGTAACCGTGGA-CAT

                       
        360 GACCGTAATCG
          1 GACCGTAATCG

        371 GGGCTATGAT


Statistics
Matches: 27,  Mismatches: 7, Indels: 2
        0.75            0.19        0.06

Matches are distributed among these distances:
  23    2  0.07
  24   25  0.93

ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20


Consensus pattern (24 bp):   
GACCGTAATCGTAACCGTGGACAT

Found at i:523 original size:21 final size:21

Alignment explanation


    Indices: 477--524  Score: 53
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        467 AGGTGGCAAG

                             *   
        477 TATGGTGGTAGGGGTGATCGT
          1 TATGGTGGTAGGGGTGACCGT

            *                *    
        498 CATGGTGG-AGGTGGTGGCCGT
          1 TATGGTGGTAGG-GGTGACCGT

                  
        519 TATGGT
          1 TATGGT

        525 CCTGATCGGA


Statistics
Matches: 22,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  20    3  0.14
  21   19  0.86

ACGTcount: A:0.12, C:0.08, G:0.48, T:0.31


Consensus pattern (21 bp):   
TATGGTGGTAGGGGTGACCGT

Found at i:2670 original size:21 final size:21

Alignment explanation


    Indices: 2627--2670  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2617 AACTTGAAAT

                       *    *    
       2627 AATATTTACTCCTTTTGTATA
          1 AATATTTACTCATTTTATATA

                    *         *  
       2648 AATATTTAGTCATTTTATTTA
          1 AATATTTACTCATTTTATATA

              
       2669 AA
          1 AA

       2671 ACAATTTGAA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52


Consensus pattern (21 bp):   
AATATTTACTCATTTTATATA
Done.