Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01545.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:405 original size:4 final size:4

Alignment explanation


    Indices: 396--423  Score: 56
    Period size: 4  Copynumber: 7.0  Consensus size: 4

        386 TACACTGTTG

                                              
        396 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
          1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT

        424 CACATTCATA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   24  1.00

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50


Consensus pattern (4 bp):   
GTAT

Done.