Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00761.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2375
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27


Found at i:1444 original size:54 final size:54

Alignment explanation


    Indices: 1267--1470  Score: 228
    Period size: 54  Copynumber: 3.8  Consensus size: 54

       1257 TCCTTTGAAT

                    **       **           *            *      *   
       1267 TTGGCTGTTGCAAAAGATGATGTTACACTAGCAGCTAATGTTTGTCCTTCGAAC
          1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC

               *             **      *  *                         
       1321 TTGTCTGTCACAAAAGATGATGTTATACGAACAGCTAATGTTTCTCCTTCAAAC
          1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC

                   *                      *         *             
       1375 TTGGCTGACACAAAAGACAATGTTACACTAGCAGCTAATGCTTCTCCTTCAAAC
          1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC

                 *   **           *          *        
       1429 TTGGCAGTCGTAAAAGACAATGCTACACTAACAACTAATGTT
          1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTT

       1471 AAAGAGAACA


Statistics
Matches: 126,  Mismatches: 24, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  54  126  1.00

ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Consensus pattern (54 bp):   
TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC
Done.