Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00774.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3175
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25


Found at i:3041 original size:12 final size:12

Alignment explanation


    Indices: 3009--3041  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       2999 GAAGATTGAA

                        
       3009 GAGATGGATGAG
          1 GAGATGGATGAG

                         
       3021 GATGA-GGATGAG
          1 GA-GATGGATGAG

                     
       3033 GAGATGGAT
          1 GAGATGGAT

       3042 ATGTAAATGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    2  0.11
  12   15  0.79
  13    2  0.11

ACGTcount: A:0.33, C:0.00, G:0.48, T:0.18


Consensus pattern (12 bp):   
GAGATGGATGAG
Done.