Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00791.M1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4822
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:2428 original size:3 final size:3
Alignment explanation
Indices: 2420--2447 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2410 AATTCTCCAT
2420 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
2448 TCCTCCTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:2886 original size:6 final size:6
Alignment explanation
Indices: 2875--2900 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2865 AGGTGGAGCA
2875 CCACCT CCACCT CCACCT CCACCT CC
1 CCACCT CCACCT CCACCT CCACCT CC
2901 TGGAGGCCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.69, G:0.00, T:0.15
Consensus pattern (6 bp):
CCACCT
Found at i:2929 original size:36 final size:36
Alignment explanation
Indices: 2884--2970 Score: 165
Period size: 36 Copynumber: 2.4 Consensus size: 36
2874 ACCACCTCCA
2884 CCTCCACCTCCACCTCCTGGAGGCCGAGCTCCAGGC
1 CCTCCACCTCCACCTCCTGGAGGCCGAGCTCCAGGC
*
2920 CCTCCACCTCCACCTCCTGGAGGCCGAGCTCTAGGC
1 CCTCCACCTCCACCTCCTGGAGGCCGAGCTCCAGGC
2956 CCTCCACCTCCACCT
1 CCTCCACCTCCACCT
2971 AGAGCTCCCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.14, C:0.52, G:0.18, T:0.16
Consensus pattern (36 bp):
CCTCCACCTCCACCTCCTGGAGGCCGAGCTCCAGGC
Done.