Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00797.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5411
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:357 original size:15 final size:15

Alignment explanation


    Indices: 339--379  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        329 GTCTTAGGGG

                            
        339 TTTTTTTTTCTTT-TC
          1 TTTTTTTTT-TTTGTC

                           
        354 TTTTTTTTTTTTGTC
          1 TTTTTTTTTTTTGTC

                       
        369 TTTGTTTTTTT
          1 TTT-TTTTTTT

        380 AATGAAATTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    3  0.12
  15   14  0.58
  16    7  0.29

ACGTcount: A:0.00, C:0.07, G:0.05, T:0.88


Consensus pattern (15 bp):   
TTTTTTTTTTTTGTC
Done.