Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00805.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4495
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33


Found at i:206 original size:99 final size:99

Alignment explanation


    Indices: 35--233  Score: 398
    Period size: 99  Copynumber: 2.0  Consensus size: 99

         25 CTATTACAAG

                                                                             
         35 AGCCCTCTTGTTCCAAAAAAATGTCCCTAAACAATACTGGGGGGAGGCTGTTTTAACTGCTACTC
          1 AGCCCTCTTGTTCCAAAAAAATGTCCCTAAACAATACTGGGGGGAGGCTGTTTTAACTGCTACTC

                                              
        100 ATATGATAAATAGATTGCCTACAAAAGTCCTTGA
         66 ATATGATAAATAGATTGCCTACAAAAGTCCTTGA

                                                                             
        134 AGCCCTCTTGTTCCAAAAAAATGTCCCTAAACAATACTGGGGGGAGGCTGTTTTAACTGCTACTC
          1 AGCCCTCTTGTTCCAAAAAAATGTCCCTAAACAATACTGGGGGGAGGCTGTTTTAACTGCTACTC

                                              
        199 ATATGATAAATAGATTGCCTACAAAAGTCCTTGA
         66 ATATGATAAATAGATTGCCTACAAAAGTCCTTGA

             
        233 A
          1 A

        234 TCTCAAAGTC


Statistics
Matches: 100,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  99  100  1.00

ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Consensus pattern (99 bp):   
AGCCCTCTTGTTCCAAAAAAATGTCCCTAAACAATACTGGGGGGAGGCTGTTTTAACTGCTACTC
ATATGATAAATAGATTGCCTACAAAAGTCCTTGA

Found at i:601 original size:33 final size:33

Alignment explanation


    Indices: 559--649  Score: 164
    Period size: 33  Copynumber: 2.8  Consensus size: 33

        549 TTTCTTCTTG

                       **                    
        559 ACATTCCAGCTATTGTCCAGCAACCAAACACTC
          1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC

                                             
        592 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
          1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC

                                     
        625 ACATTCCAGCTCCTGTCCAGCAACC
          1 ACATTCCAGCTCCTGTCCAGCAACC

        650 TGAAACAGAG


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   56  1.00

ACGTcount: A:0.30, C:0.41, G:0.10, T:0.20


Consensus pattern (33 bp):   
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Done.