Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00806.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5261
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34


Found at i:2614 original size:33 final size:33

Alignment explanation


    Indices: 2577--2700  Score: 230
    Period size: 33  Copynumber: 3.8  Consensus size: 33

       2567 CTCTGTTTCA

                                             
       2577 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                       *                     
       2610 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                                             
       2643 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                         *           
       2676 GGTTGCTGGACAGTAGCTGGAATGT
          1 GGTTGCTGGACAGGAGCTGGAATGT

       2701 CAAGAAGAAA


Statistics
Matches: 88,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   88  1.00

ACGTcount: A:0.18, C:0.10, G:0.43, T:0.30


Consensus pattern (33 bp):   
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

Done.