Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00823.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1486
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33


Found at i:1430 original size:13 final size:13

Alignment explanation


    Indices: 1412--1437  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1402 CTACAACCCT

                         
       1412 TGAATTGAGTCTC
          1 TGAATTGAGTCTC

                         
       1425 TGAATTGAGTCTC
          1 TGAATTGAGTCTC

       1438 ACAATATTAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38


Consensus pattern (13 bp):   
TGAATTGAGTCTC
Done.