Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00828.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4976
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1154 original size:13 final size:15

Alignment explanation


    Indices: 1125--1156  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1115 GCCCAGCCCG

                           
       1125 TATTAACTTTTTATA
          1 TATTAACTTTTTATA

                  *        
       1140 TATTAATTTTTTATA
          1 TATTAACTTTTTATA

              
       1155 TA
          1 TA

       1157 AAAATAAATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62


Consensus pattern (15 bp):   
TATTAACTTTTTATA
Done.