Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00867.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1859
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37


Found at i:1816 original size:24 final size:24

Alignment explanation


    Indices: 1788--1838  Score: 84
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1778 AGCTTGTAAA

                                    
       1788 AACCATCACTGGAGCATCAAATTG
          1 AACCATCACTGGAGCATCAAATTG

                       *  *         
       1812 AACCATCACTGTAGTATCAAATTG
          1 AACCATCACTGGAGCATCAAATTG

               
       1836 AAC
          1 AAC

       1839 ATATCCCAAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24


Consensus pattern (24 bp):   
AACCATCACTGGAGCATCAAATTG
Done.