Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00872.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33


Found at i:892 original size:3 final size:3

Alignment explanation


    Indices: 841--875  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        831 TGTTATTGAG

                                                           
        841 GAT GAT GAT GAT GAT GAT GAT GAT GAT G-T GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

        876 TAGTGTTTAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   29  0.94

ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34


Consensus pattern (3 bp):   
GAT
Done.