Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01562.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4723
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:3418 original size:15 final size:15

Alignment explanation


    Indices: 3398--3426  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       3388 TCACAAAGAT

                           
       3398 AACTTAAAAATAGGC
          1 AACTTAAAAATAGGC

                          
       3413 AACTTAAAAATAGG
          1 AACTTAAAAATAGG

       3427 TGGGATGCCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21


Consensus pattern (15 bp):   
AACTTAAAAATAGGC
Done.