Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00884.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6049
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:4948 original size:44 final size:43

Alignment explanation


    Indices: 4911--4997  Score: 131
    Period size: 44  Copynumber: 2.0  Consensus size: 43

       4901 GATTATTATG

                                    *        *           
       4911 ACAAATCTTATC-TCCTTGAAGTTGCAGTGGAGTAGATTGAAGCC
          1 ACAAATCTTATCTTCC-TGAAGTTACAGTGGAGCAGATTGAAG-C

                                                       
       4955 ACAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGC
          1 ACAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGC

       4998 TACTAATCCT


Statistics
Matches: 40,  Mismatches: 2, Indels: 3
        0.89            0.04        0.07

Matches are distributed among these distances:
  43    1  0.03
  44   36  0.90
  45    3  0.08

ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Consensus pattern (43 bp):   
ACAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGC
Done.