Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00900.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 308

Length: 514
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30


Found at i:460 original size:14 final size:14

Alignment explanation


    Indices: 425--460  Score: 56
    Period size: 13  Copynumber: 2.6  Consensus size: 14

        415 ATATGGAAGG

                      *   
        425 TTTGATGTTTTGTT
          1 TTTGATGTTTGGTT

                          
        439 TTTG-TGTTTGGTT
          1 TTTGATGTTTGGTT

                     
        452 TTTGATGTT
          1 TTTGATGTT

        461 ACTGTTCTTC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  13   12  0.60
  14    8  0.40

ACGTcount: A:0.06, C:0.00, G:0.25, T:0.69


Consensus pattern (14 bp):   
TTTGATGTTTGGTT
Done.