Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00902.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32


Found at i:1224 original size:71 final size:71

Alignment explanation


    Indices: 1108--1249  Score: 284
    Period size: 71  Copynumber: 2.0  Consensus size: 71

       1098 GGCTGTCTCA

                                                                             
       1108 ACGGTATATACGAAGATGCCGGAATCTTTTGCTGCTAATACAAGTTCATGTTGCATATATTCAAT
          1 ACGGTATATACGAAGATGCCGGAATCTTTTGCTGCTAATACAAGTTCATGTTGCATATATTCAAT

                  
       1173 TCTATG
         66 TCTATG

                                                                             
       1179 ACGGTATATACGAAGATGCCGGAATCTTTTGCTGCTAATACAAGTTCATGTTGCATATATTCAAT
          1 ACGGTATATACGAAGATGCCGGAATCTTTTGCTGCTAATACAAGTTCATGTTGCATATATTCAAT

                  
       1244 TCTATG
         66 TCTATG

       1250 GTACTGCAAA


Statistics
Matches: 71,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  71   71  1.00

ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Consensus pattern (71 bp):   
ACGGTATATACGAAGATGCCGGAATCTTTTGCTGCTAATACAAGTTCATGTTGCATATATTCAAT
TCTATG
Done.