Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00920.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 400

Length: 668
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30


Found at i:68 original size:24 final size:24

Alignment explanation


    Indices: 41--99  Score: 73
    Period size: 24  Copynumber: 2.5  Consensus size: 24

         31 GATTCTACCA

                             *      
         41 CCACCATCACCACCTATTGTGAAG
          1 CCACCATCACCACCTATCGTGAAG

                  * *  *            
         65 CCACCAACGCCTCCTATCGTGAAG
          1 CCACCATCACCACCTATCGTGAAG

                 *     
         89 CCACCTTCACC
          1 CCACCATCACC

        100 GGAAACACCG


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.25, C:0.44, G:0.12, T:0.19


Consensus pattern (24 bp):   
CCACCATCACCACCTATCGTGAAG
Done.