Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00926.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1963
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33


Found at i:1352 original size:10 final size:10

Alignment explanation


    Indices: 1325--1353  Score: 51
    Period size: 9  Copynumber: 3.0  Consensus size: 10

       1315 AGCTTATGGC

                      
       1325 TTTAGCTCAT
          1 TTTAGCTCAT

                      
       1335 TTTA-CTCAT
          1 TTTAGCTCAT

                      
       1344 TTTAGCTCAT
          1 TTTAGCTCAT

       1354 ATTTTCAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
   9    9  0.50
  10    9  0.50

ACGTcount: A:0.21, C:0.21, G:0.07, T:0.52


Consensus pattern (10 bp):   
TTTAGCTCAT
Done.