Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00967.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 469

Length: 782
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35


Found at i:358 original size:11 final size:12

Alignment explanation


    Indices: 342--383  Score: 50
    Period size: 13  Copynumber: 3.4  Consensus size: 12

        332 CCTTCTTTGC

                        
        342 TTTGTA-TTGTT
          1 TTTGTATTTGTT

                      *  
        353 TTTGTATTCTCTT
          1 TTTGTATT-TGTT

                         
        366 TTTCGTATTTGTT
          1 TTT-GTATTTGTT

                 
        379 TTTGT
          1 TTTGT

        384 TGCCTTTGTC


Statistics
Matches: 26,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  11    6  0.23
  12    3  0.12
  13   12  0.46
  14    5  0.19

ACGTcount: A:0.07, C:0.07, G:0.14, T:0.71


Consensus pattern (12 bp):   
TTTGTATTTGTT
Done.